Browsing by Author "Aladağ, Ahmet Emre"
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An integrated model for visualizing biclusters from gene expression data and PPI networks
We provide a model to integrate the visualization of biclusters extracted from gene expresion data and the underlying PPI networks. Such an integration conveys the biologically relevant interconnection between these two ... -
Reliability-Oriented bioinformatic networks visualization
Aladağ, Ahmet Emre; Erten, Cesim; Sözdinler, Melih (Oxford University Press, 2011)We present our protein-protein interaction (PPI) network visualization system RobinViz (reliability-oriented bioinformatic networks visualization). Clustering the PPI network based on gene ontology (GO) annotations or ... -
SPINAL: scalable protein interaction network alignment
Aladağ, Ahmet Emre; Erten, Cesim (Oxford University Press, 2013)Motivation: Given protein-protein interaction (PPI) networks of a pair of species a pairwise global alignment corresponds to a one-to-one mapping between their proteins. Based on the presupposition that such a mapping ... -
Visualization of protein-protein interaction networks
Aladağ, Ahmet Emre (Kadir Has Üniversitesi, 2011)We provide a model to visualize and verify PPi Networks using Gene Expression andGene Ontology data. A clustered dual (central/peripheral) visualization model is providedand user can cluster PPi Networks according to ...